PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017531m
Common NameCICLE_v10017531mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 184aa    MW: 20878.3 Da    PI: 8.8525
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017531mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.43e-33104162159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg Hnh+
  Ciclev10017531m 104 LDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHR 162
                      59********************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3489162IPR003657WRKY domain
SuperFamilySSF1182901.31E-2996163IPR003657WRKY domain
PROSITE profilePS5081130.10299164IPR003657WRKY domain
SMARTSM007744.1E-38104163IPR003657WRKY domain
PfamPF031061.4E-26105162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MENCQMFFPC SSTGKSVYPV MTTTDYIANS SDHVFSHGDQ SSSSGGFLGL KQNSGPNTDI  60
VKNDSINGAF HGSESEEKSS KMKGEKKIKK PRFAFQTRSQ VDILDDGYRW RKYGQKAVKD  120
NKFPRSYYRC THEGCNVKKQ VQRLTNDEGI VVTTYEGMHN HRIEKPTDNF EHILNQLQIY  180
TPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-2994163776Probable WRKY transcription factor 4
2lex_A9e-2994163776Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447036.11e-138hypothetical protein CICLE_v10017531mg
RefseqXP_006470089.11e-138PREDICTED: probable WRKY transcription factor 75
SwissprotQ9FYA27e-55WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLV4UDD71e-138V4UDD7_9R
STRINGPOPTR_0001s33560.12e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-54WRKY DNA-binding protein 75